PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025913-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 116aa    MW: 13045.4 Da    PI: 5.0312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025913-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000232042123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg +F++++   +H r H
  NNU_025913-RA 20 FRCHKCGWPFPNHHPSAKHRRAH 42
                   89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712042IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MDGDEVRTMT HPPEHETPVF RCHKCGWPFP NHHPSAKHRR AHKKVCGALD GYKLIEPDRD  60
EEDSGNLKRS ESFESGHKMV GTEEDEFADA ALEFTETVAS PTTKSLEVTT EPLEVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247132.15e-78PREDICTED: uncharacterized protein LOC104590253 isoform X1
RefseqXP_010247133.14e-78PREDICTED: uncharacterized protein LOC104590253 isoform X2
TrEMBLA0A103YFS21e-21A0A103YFS2_CYNCS; Zinc finger, C2H2 (Fragment)
STRINGPOPTR_0014s14320.18e-20(Populus trichocarpa)